This is good practice when working in bioinformatics. We’re going to create a file to take notes about what we’ve been doing with the data files in ~/shell_data/untrimmed_fastq. To add text to files, we’re going to use a text editor called Nano. We’ve been able to do a lot of work with files that already exist, but what if we want to write our own files? We’re not going to type in a FASTA file, but we’ll see as we go through other tutorials, there are a lot of reasons we’ll want to write a file, or edit an existing file. Use chmod to make a script an executable program. Use the bash command to execute a shell script. Use the nano text editor to modify text files.
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